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Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
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Fecha : |
20/02/2024 |
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Actualizado : |
20/02/2024 |
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Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
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Autor : |
ROMANIUK, E.; VERA, B.; PERAZA, P.; CIAPPESONI, G.; DAMIÁN, J.P.; VAN LIER, E. |
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Afiliación : |
ESTEFANÍA ROMANIUK, Dpto Producción Animal y Pasturas, Facultad de Agronomía, Universidad de la República, Avda. Garzón 780, Montevideo 12900, Uruguay; Estación Experimental Facultad de Agronomía Salto, Ruta 31, km 21, Salto 50000, Uruguay; BRENDA VERA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; PABLO PERAZA DOS SANTOS, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; CARLOS GABRIEL CIAPPESONI SCARONE, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; JUAN PABLO DAMIÁN, Dpto de Biociencias Veterinarias, Facultad de Veterinaria, Universidad de la República, Ruta 8, km 18, Montevideo 13000, Uruguay; Núcleo de Bienestar Animal, Facultad de Veterinaria, Universidad de la República, Ruta 8, km 18, Montevideo 13000, Uruguay; ELIZE VAN LIER, Dpto Producción Animal y Pasturas, Facultad de Agronomía, Universidad de la República, Avda. Garzón 780, Montevideo 12900, Uruguay; Estación Experimental Facultad de Agronomía Salto, Ruta 31, km 21, Salto 50000, Uruguay. |
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Título : |
Identification of candidate genes and pathways linked to the temperament trait in sheep. |
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Fecha de publicación : |
2024 |
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Fuente / Imprenta : |
Genes. 2024; 15(2):229. https://doi.org/10.3390/genes15020229 -- OPEN ACCESS. |
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ISSN : |
eISSN 2073-4425 |
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DOI : |
10.3390/genes15020229 |
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Idioma : |
Inglés |
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Notas : |
Article history: Submission received: 4 December 2023; Revised: 5 January 2024; Accepted: 10 January 2024; Published: 11 February 2024. -- Academic Editor: Emilia Bagnicka. -- Funding: This research was funded by the Comisión Sectorial de Investigación Científica (CSIC, Universidad de la República), which approved the project CSIC_I+D_2018_287; the SMARTER project funded by the European Union Horizon 2020 program (agreement no. 772787); the projects INIA CL 40 (resistance to parasites) and CL 38 (RUMIAR); and to the Comité Académico de Posgrados for the scholarship master?s degree 2020 (POS_NAC_2019_1_157979), Universidad de la República. -- Institutional Review Board Statement: The animal study protocol was approved by the Honorary Commission for Animal Experimentation (Comisión Honoraria de Experimentación Animal, CHEA, protocols N° 021130-006307-11 and 020300-000653-18-ID, CHEA 701), Universidad de la República. -- This article belongs to the Section Animal Genetics and Genomics (https://www.mdpi.com/journal/genes/sections/Animal_Genetics_Genomics ) -- Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
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Contenido : |
ABSTRACT.- Temperament can be defined as the emotional variability among animals of the same species in response to the same stimulus, grouping animals by their reactivity as nervous, intermediate, or calm. Our goal was to identify genomic regions with the temperament phenotype measured by the Isolation Box Test (IBT) by single-step genome-wide association studies (ssGWAS). The database consisted of 4317 animals with temperament records, and 1697 genotyped animals with 38,268 effective Single Nucleotide Polymorphism (SNP) after quality control. We identified three genomic regions that explained the greatest percentage of the genetic variance, resulting in 25 SNP associated with candidate genes on chromosomes 6, 10, and 21. A total of nine candidate genes are reported for the temperament trait, which is: PYGM, SYVN1, CAPN1, FADS1, SYT7, GRID2, GPRIN3, EEF1A1 and FRY, linked to the energetic activity of the organism, synaptic transmission, meat tenderness, and calcium associated activities. This is the first study to identify these genetic variants associated with temperament in sheep, which could be used as molecular markers in future behavioral research. © 2024 by the authors. |
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Palabras claves : |
CAPN1; GRID2; Ovis aries; PYMG; SISTEMA GANADERO EXTENSIVO - INIA; SsGWAS; SYT7. |
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Asunto categoría : |
L01 Ganadería |
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URL : |
https://www.mdpi.com/2073-4425/15/2/229/pdf
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Marc : |
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022 $aeISSN 2073-4425
024 7 $a10.3390/genes15020229$2DOI
100 1 $aROMANIUK, E.
245 $aIdentification of candidate genes and pathways linked to the temperament trait in sheep.$h[electronic resource]
260 $c2024
500 $aArticle history: Submission received: 4 December 2023; Revised: 5 January 2024; Accepted: 10 January 2024; Published: 11 February 2024. -- Academic Editor: Emilia Bagnicka. -- Funding: This research was funded by the Comisión Sectorial de Investigación Científica (CSIC, Universidad de la República), which approved the project CSIC_I+D_2018_287; the SMARTER project funded by the European Union Horizon 2020 program (agreement no. 772787); the projects INIA CL 40 (resistance to parasites) and CL 38 (RUMIAR); and to the Comité Académico de Posgrados for the scholarship master?s degree 2020 (POS_NAC_2019_1_157979), Universidad de la República. -- Institutional Review Board Statement: The animal study protocol was approved by the Honorary Commission for Animal Experimentation (Comisión Honoraria de Experimentación Animal, CHEA, protocols N° 021130-006307-11 and 020300-000653-18-ID, CHEA 701), Universidad de la República. -- This article belongs to the Section Animal Genetics and Genomics (https://www.mdpi.com/journal/genes/sections/Animal_Genetics_Genomics ) -- Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
520 $aABSTRACT.- Temperament can be defined as the emotional variability among animals of the same species in response to the same stimulus, grouping animals by their reactivity as nervous, intermediate, or calm. Our goal was to identify genomic regions with the temperament phenotype measured by the Isolation Box Test (IBT) by single-step genome-wide association studies (ssGWAS). The database consisted of 4317 animals with temperament records, and 1697 genotyped animals with 38,268 effective Single Nucleotide Polymorphism (SNP) after quality control. We identified three genomic regions that explained the greatest percentage of the genetic variance, resulting in 25 SNP associated with candidate genes on chromosomes 6, 10, and 21. A total of nine candidate genes are reported for the temperament trait, which is: PYGM, SYVN1, CAPN1, FADS1, SYT7, GRID2, GPRIN3, EEF1A1 and FRY, linked to the energetic activity of the organism, synaptic transmission, meat tenderness, and calcium associated activities. This is the first study to identify these genetic variants associated with temperament in sheep, which could be used as molecular markers in future behavioral research. © 2024 by the authors.
653 $aCAPN1
653 $aGRID2
653 $aOvis aries
653 $aPYMG
653 $aSISTEMA GANADERO EXTENSIVO - INIA
653 $aSsGWAS
653 $aSYT7
700 1 $aVERA, B.
700 1 $aPERAZA, P.
700 1 $aCIAPPESONI, G.
700 1 $aDAMIÁN, J.P.
700 1 $aVAN LIER, E.
773 $tGenes. 2024; 15(2):229. https://doi.org/10.3390/genes15020229 -- OPEN ACCESS.
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Registro original : |
INIA Las Brujas (LB) |
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| Registros recuperados : 39 | |
| 2. |  | PERAZA, P.; PRAVIA, M.I.; NAVAJAS, E. Genome-wide association study of residual feed intake in Hereford cattle. In: AUPA, Proceedings del VII Congreso Uruguayo de Producción Animal. Sección Cambio Climático y Producción Sostenible (Climate Change Section), 14 y 15 diciembre 2021. Archivos Latinoamericanos de Producción Animal, 29(Supl.1), p.69-71. (Archivos Latinoamericanos de Producción Animal, Vol.29, Supl.1) Corresponding author: P. Peraza, Instituto Nacional de Investigación Agropecuaria (INIA), Las Brujas, Unidad de Biotecnología, Ruta 48 Km 10, Canelones, (Uruguay), mailto: pperaza@inia.org.uy| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 5. | | GRASSO, N.; PERAZA, P.; NAVAJAS, E. Performance of the Geneseek® genomic profiler bovine HD? for beef cattle in Hereford. [Abstract]. Congreso de la Asociación Latinoamericana de Producción Animal, 24.; Congreso de la Sociedad Chilena de Producción Animal, 40., Puerto Varas, Chile, 9 al 13 noviembre 2015. ln: Reunión ALPA (24., Puerto Varas, Chile). Resúmenes. Puerto Varas (Chile): ALPA, 2015. p. 211| Tipo: Abstracts/Resúmenes |
| Biblioteca(s): INIA Las Brujas. |
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| 14. | | NAVAJAS, E.; RAVAGNOLO, O.; AGUILAR, I.; CIAPPESONI, G.; PERAZA, P.; DALLA RIZZA, M.; MONTOSSI, F. Desarrollo de una plataforma en selección genómica enfocada en el progreso genético animal. ln: Jornada técnica, VI Jornada de agrobiotecnología. INIA Las Brujas, 20 de octubre de 2012 Conocimiento intensivo para el sector productivo: situación actual y perspectivas. Canelones (UY): INIA, 2012. 10-12 (Serie Actividades de Difusión; 698)| Tipo: Actividades de Difusión |
| Biblioteca(s): INIA Las Brujas. |
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| 18. | | PERAZA, P.; RINCÓN, G.; SOTELO-SILVEIRA, J.; CIAPPESONI, G.; ISLAS-TREJO, A.; MEDRANO, J.F. Estudio mediante RNA-SEQ del transcriptoma de diferentes tejidos de ovinos resistentes y susceptibles a parásitos gastrointestinales. GGM 16 - COMUNICACIONES LIBRES - GGM. GENÓMICA Y GENÉTICA MOLECULAR In: JOURNAL OF BASIC & APPLIED GENETICS, 2016, Vol.27, Iss. 1 (Supp.). XVI LATIN AMERICAN CONGRESS OF GENETICS, IV CONGRESS OF THE URUGUAYAN SOCIETY OF GENETICS, XLIX ANNUAL MEETING OF THE GENETICS SOCIETY OF CHILE, XLV ARGENTINE CONGRESS OF GENETICS, 9-12 October 2016. PROCEEDINGS. Montevideo (Uruguay): SAG, 2016. p. 262| Tipo: Trabajos en Congresos/Conferencias |
| Biblioteca(s): INIA Las Brujas. |
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| 19. | | PERAZA, P.; NAVAJAS, E.; MONTOSSI, F.; BRANDA, A.; RAVAGNOLO, O.; CIAPPESONI, G.; DALLA RIZZA, M. Organización y gestión del Banco de ADN Genómico animal ln: Jornada técnica, VI Jornada de agrobiotecnología. INIA Las Brujas, 20 de octubre de 2012. Conocimiento intensivo para el sector productivo: situación actual y perspectivas. Canelones (UY): INIA, 2012. 1-4 (INIA Serie Actividades de Difusión; 698)| Tipo: Actividades de Difusión |
| Biblioteca(s): INIA Las Brujas. |
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| Registros recuperados : 39 | |
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